If one is writing in Latex there are some challenges in finding a good reference manager that suits oneself and to make it work automatically with Latex. Many of them come with support for propietary software like Microsoft's Word. There exist a plethora of tools for reference managment. If you are interested in the technical details, you may check out the article Xie ( 2019) and the FAQ page at. It will also try to compile the LaTeX file for a sufficient number of times to make sure all cross-references are resolved. If you use TinyTeX and certain LaTeX packages are required but not installed, tinytex will try to automatically install them for you. The R package tinytex has provided helper functions to compile LaTeX documents to PDF (the main function is tinytex::latexmk()). When R Markdown is converted to PDF, Pandoc converts Markdown to an intermediate LaTeX document first. For example, you can store a copy of TinyTeX on your USB drive or other portable devices, and use it on other computers with the same operating system. TinyTeX is lightweight (compared to other LaTeX distributions), cross-platform, and portable. There are two advantages of using TinyTeX: Please note that “ tinytex” refers to the R package, and “TinyTeX” refers to the LaTeX distribution. Tinytex :: install_tinytex() # to uninstall TinyTeX, run # tinytex::uninstall_tinytex() 17.7 Organize an R Markdown project into a research website with workflowr.17.6 Collaborate on Rmd documents through Google Drive with trackdown.17.3 Render R Markdown with rmarkdown::render().16.9 Write books and long-form reports with bookdown.16.8 R Markdown templates in R packages.16.6 The working directory for R code chunks.16.3 Read multiple code chunks from an external script (*).16.2 Read external scripts into a chunk.15.9.1 Generate data in R and read it in Asymptote.15.6.3 Write YAML data to a file and also display it.15.6.2 Include LaTeX code in the preamble.15.6 Write the chunk content to a file via the cat engine.15.3 Execute content conditionally via the asis engine.15.2 Run Python code and interact with Python.15.1 Register a custom language engine (*).14.9.3 Keep multiple copies of the cache.14.9.2 Invalidate the cache by changes in global variables.14.9.1 Invalidate the cache by changing code in the expression.14.9 A more transparent caching mechanism.14.8 Allow duplicate labels in code chunks (*).14.7 Use knitr::knit_expand() to generate Rmd source.14.6 Save a group of chunk options and reuse them (*).14.5 Modify a plot in a previous code chunk.14.4 Generate a plot and display it elsewhere.14.2 Use an object before it is created (*).14.1.2 Use the same chunk label in another chunk.14.1.1 Embed one chunk in another chunk (*).13.5 Embed an interactive 3D plot with rgl.13.4 Show the chunk header in the output.13.3 Report how much time each chunk takes to run.12.5 Output figures in the HTML5 format.11.17 Customize the printing of objects in chunks (*).11.16 Step-by-step plots with low-level plotting functions (*).11.13 Add attributes to text output blocks (*).11.12 Remove leading hashes in text output.11.11 Output text as raw Markdown content (*).11.9 Collapse text output blocks into source blocks.11.7 Hide code, text output, messages, or plots.11.5 Cache a code chunk for multiple output formats.11.3 Multiple graphical output formats for the same plot.10.3 Other packages for creating tables.10.2.4 Scaling down wide tables in LaTeX.10.1.9 Generate multiple tables from a for-loop (*).8.2 The two-way workflow between R Markdown and Word.7.14 Improve accessibility of HTML pages.7.10 Include the content of an existing HTML file (*).7.8 Embed arbitrary files in the HTML output file.7.7 Embed the Rmd source file in the HTML output file.7.5 Fold all code blocks but show some initially.6.10 Use a custom Pandoc LaTeX template (*).6.7 Render documents containing Unicode characters. 5.6.1 Show a verbatim inline expression.5.1.1 Using an R function to write raw HTML or LaTeX code.4.20 Manipulate Markdown via Pandoc Lua filters (*).4.19 Put together all code in the appendix (*).4.18 Omit a heading in the table of contents.
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